Mr. Idan Gabdank

Contacts

Email:
Homepage:
Office:	-105 in 37 building
Phone number:	08-6428097
Fax number:	08-6477650
Box number:	8
Office hours:	Mon 10:00-12:00

Teaching

Spring 2005	20219071 Introduction to Programming
Spring 2006	20215201 Software Engineering
Spring 2007	20215141 Workshop on Software Engineering Project
Spring 2008	20215141 Workshop on Software Engineering Project
Spring 2009	20215141 Workshop on Software Engineering Project
Spring 2010	20215141 Workshop on Software Engineering Project
Spring 2011	20215141 Workshop on Software Engineering Project

Education

2004 - B.Sc Ben-Gurion University of the Negev, Computer Science Department

2007 - M.Sc Ben Gurion University of the Negev, Computer Science
Advisor: Danny Barash

Awards & Honnors

2006 - Friedman award

2006 - Pratt award

2009 - Research excellence prize

Selected publications all BibTex

Articles

BibTeX M. David, I. Gabdank, M. Ben-David, A. Zilka, I. Orr, D. Barash, M. Shapira. Preferential translation of Hsp83 in Leishmania requires a thermosensitive polypyrimidine-rich element in the 3' UTR and involves scanning of the 5' UTR. RNA, 16(2):364-374, February 2010.
BibTeX I. Gabdank, D. Barash, E.N. Trifonov. FineStr : a web server for single-base-resolution nucleosome positioning. Bioinformatics, January 2010.
BibTeX D. Barash, I. Gabdank. Energy Minimization Methods Applied to Riboswitches: A Perspective and Challenges. RNA Biology, 7(1):89-96, 2010.
BibTeX I. Gabdank, D. Barash, E.N. Trifonov. Nucleosome DNA bendability matrix (C. elegans). Journal of Biomolecular Structure and Dynamics, 26(4):403-412, February 2009.
BibTeX A. Cohen, S. Bocobza, I. Veksler-Lublinsky, I. Gabdank, D. Barash, A. Aharoni, M. Shapira, K. Kedem. Computational Identification of Three-Way Junctions in Folded RNAs: A Case Study in Arabidopsis. In Silico Biology, 8:0010, March 2008.
BibTeX A. Avihoo, I. Gabdank, M. Shapira, D. Barash. In Silico Design of Small RNA Switches. IEEE Transactions on Nanobioscience, Special Issue on Computational Nanobioscience, 6:4-11, March 2007.
BibTeX E.N. Trifonov, I. Gabdank, D. Barash, Y. Sobolevsky. Primordia Vita. Deconvolution from Modern Sequences. Origins of Life and Evolution of Biospheres, 36(5-6):559-565, December 2006.
BibTeX I. Gabdank, D. Barash, E.N. Trifonov. Tracing Ancient mRNA Hairpins. Journal of Biomolecular Structure and Dynamics, 24(2):163-170, October 2006.