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Packages that use AbstractFeatureVector | |
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contextFold.features | Contains scoring model's parameterization related functionalities. |
contextFold.scoring | Contains RNA secondary structure scoring and similarity computation related utilities. |
Uses of AbstractFeatureVector in contextFold.features |
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Subclasses of AbstractFeatureVector in contextFold.features | |
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class |
DenseFeatureVector
A dense implementation of a feature vector |
class |
SparseFeatureVector
|
Methods in contextFold.features that return AbstractFeatureVector | |
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AbstractFeatureVector |
FeatureManager.getElementFeaturs(RNA rna,
int elementType,
int val1)
|
AbstractFeatureVector |
FeatureManager.getElementWeightedFeaturs(RNA rna,
int elementType,
int val1)
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Methods in contextFold.features with parameters of type AbstractFeatureVector | |
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void |
DenseFeatureVector.add(AbstractFeatureVector other)
|
void |
AbstractFeatureVector.add(AbstractFeatureVector other)
The same as add(AbstractFeatureVector, float) , where
amount = 1. |
void |
AbstractFeatureVector.add(AbstractFeatureVector other,
float amount)
Adds to this object another weight vector. |
float |
DenseFeatureVector.dot(AbstractFeatureVector other)
|
float |
AbstractFeatureVector.dot(AbstractFeatureVector other)
|
void |
DenseFeatureVector.sub(AbstractFeatureVector other)
|
void |
AbstractFeatureVector.sub(AbstractFeatureVector other)
The same as sub(AbstractFeatureVector, float) , where
amount = 1. |
void |
DenseFeatureVector.sub(AbstractFeatureVector other,
float amount)
|
void |
AbstractFeatureVector.sub(AbstractFeatureVector other,
float amount)
The same as add(AbstractFeatureVector, float) , where
other is being subtracted rather than added. |
java.lang.String |
SparseFeatureVector.toString(AbstractFeatureVector weights)
|
java.lang.String |
SparseFeatureVector.toString(AbstractFeatureVector weights,
boolean printColumn)
|
void |
DenseFeatureVector.update(AbstractFeatureVector other,
float s)
Executes add(other, s), while maintaining an inner state that allows averaging over all updates. |
Constructors in contextFold.features with parameters of type AbstractFeatureVector | |
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SparseFeatureVector(AbstractFeatureVector toCopy)
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Uses of AbstractFeatureVector in contextFold.scoring |
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Methods in contextFold.scoring that return AbstractFeatureVector | |
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AbstractFeatureVector |
FoldEvaluatorImpl.differenceFeatureVector(int[] guessFold,
int[] goldFold,
RNA rna)
|
AbstractFeatureVector |
FoldEvaluator.differenceFeatureVector(int[] guessFold,
int[] goldFold,
RNA rna)
|
Methods in contextFold.scoring with parameters of type AbstractFeatureVector | |
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void |
FoldEvaluatorImpl.differenceFeatureVector(int[] guessFold,
int[] goldFold,
AbstractFeatureVector diffVector,
RNA rna)
|
void |
FoldEvaluator.differenceFeatureVector(int[] guessFold,
int[] goldFold,
AbstractFeatureVector result,
RNA rna)
Computes the feature difference between two foldings. |
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