Uses of Class
contextFold.rnaFolding.StructureRecognizerImpl

Packages that use StructureRecognizerImpl
contextFold.models Contains a set of pre-defined (untrained) parameterizations. 
contextFold.rnaFolding Contains RNA secondary structure prediction related utilities. 
 

Uses of StructureRecognizerImpl in contextFold.models
 

Fields in contextFold.models declared as StructureRecognizerImpl
protected  StructureRecognizerImpl FeatureSetter.csr
           
 

Uses of StructureRecognizerImpl in contextFold.rnaFolding
 

Methods in contextFold.rnaFolding with parameters of type StructureRecognizerImpl
protected  int[] Traceback.traceback(int[][] _scores_3, int[] _cot, int[] _il, int[] _ml1, int[] _ml2, int[][] _rowOctIxs, StructreElementsScorer _es, int _n, int[] _hpBaseAccumScores, int[] _hpLengthScores, int[] _ilBaseScores, int[] _mlBaseScores, int[][] _ilLengthScores, int[] _ilAccumBases, StructureRecognizerImpl _csr)