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L

LAST_BASE_TYPE - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
LAST_LENGTH_TYPE - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
LAST_LOOP_TERMINATION_TYPE - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
lastPrediction() - Method in class contextFold.rna.RNA
 
Learn - Class in contextFold.learn
Implements the machine-learning algorithm for inferring feature weight parameters.
Learn(FeatureManager, FoldEvaluator, int, LossCalculator) - Constructor for class contextFold.learn.Learn
 
learn(int, List<RNA>, String, int, boolean, float, int, boolean) - Method in class contextFold.learn.Learn
 
length - Variable in class contextFold.features.ContextFeatureExtractor
 
length - Variable in class contextFold.rna.RNA
 
LENGTH_TYPES_NUM - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
load(Class<T>, String) - Static method in class contextFold.common.Utils
 
loadWeights(String) - Method in class contextFold.features.FeatureManager
 
loadWeights(String, float) - Method in class contextFold.features.FeatureManager
 
LOG_VALUE_CALCULATOR - Static variable in class contextFold.features.ValueCalculator
 
LogLengthValueFeature - Class in contextFold.features
 
LogLengthValueFeature() - Constructor for class contextFold.features.LogLengthValueFeature
 
LONG - Static variable in class contextFold.models.FeatureSetter
 
longValue(String) - Method in class contextFold.common.CmdArgumentsHandler
 
LOOP_TERMINATION_TYPES_NUM - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
loss(int[], int[]) - Method in class contextFold.scoring.FMeasureLossCalculator
 
loss(int[], int[]) - Method in class contextFold.scoring.HammingLossCalculator
 
loss(int[], int[]) - Method in interface contextFold.scoring.LossCalculator
General distance measurements between two foldings.
LossCalculator - Interface in contextFold.scoring
 

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