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M

main(String[]) - Static method in class contextFold.app.Predict
 
main(String[]) - Static method in class contextFold.app.PrintModelFeatures
 
main(String[]) - Static method in class contextFold.app.Train
 
main(String[]) - Static method in class contextFold.app.ValidatePrediction
 
main(String[]) - Static method in class contextFold.common.TrainAnnotations
 
main(String[]) - Static method in class contextFold.rna.RandomSplit
 
main(String[]) - Static method in class contextFold.rnaFolding.Folder
 
main(String[]) - Static method in class contextFold.scoring.PredictionQuality
 
make(String) - Static method in class contextFold.features.FeatureManager
 
makeContexts(int[][], byte[]) - Static method in class contextFold.features.Context
 
makeRepresentativeContexts(int) - Method in class contextFold.features.FeatureManager
 
max() - Method in class contextFold.features.DenseFeatureVector
 
MAX_INT_FEATURE_WEIGHT - Static variable in class contextFold.common.Env
 
MAX_SERVER_SEQUENCE_LENGTH - Static variable in class contextFold.common.Env
 
maxSuperContextCardinality - Static variable in class contextFold.common.Env
 
maxSuperContextCardinalityTrain - Static variable in class contextFold.common.Env
 
min() - Method in class contextFold.features.DenseFeatureVector
 
MIN_HAIRPIN_LENGTH - Static variable in class contextFold.common.Env
 
MIN_HAIRPIN_LENGTH - Static variable in interface contextFold.rnaFolding.StructureRecognizer
 
missingRequired() - Method in class contextFold.common.CmdArgumentsHandler
 
ML_BASE - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
ML_CLOSE - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
ML_OPEN - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
modify(String) - Method in class contextFold.common.StringModifier
 
MORE_THAN_ONE_BRANCH - Static variable in class contextFold.rnaFolding.Traceback
 

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