Uses of Package
contextFold.features

Packages that use contextFold.features
contextFold.app Contains java-executable programs that perform the main functionalities of the contextFold package. 
contextFold.features Contains scoring model's parameterization related functionalities. 
contextFold.learn Contains weight learning related functionalities. 
contextFold.models Contains a set of pre-defined (untrained) parameterizations. 
contextFold.rnaFolding Contains RNA secondary structure prediction related utilities. 
contextFold.scoring Contains RNA secondary structure scoring and similarity computation related utilities. 
 

Classes in contextFold.features used by contextFold.app
FeatureManager
          A parameterization object.
 

Classes in contextFold.features used by contextFold.features
AbstractFeatureVector
          A weight vector object.
Context
           
ContextFeatureExtractor
           
DenseFeatureVector
          A dense implementation of a feature vector
ElementValueCalculator
           
FeatureExtractor
           
FeatureManager
          A parameterization object.
FeatureManager.Feature
           
FeatureTemplate
           
SinglePosContext
           
ValueCalculator
           
ValueFeature
           
 

Classes in contextFold.features used by contextFold.learn
FeatureManager
          A parameterization object.
 

Classes in contextFold.features used by contextFold.models
ContextFeatureExtractor
           
FeatureManager
          A parameterization object.
FeatureTemplate
           
 

Classes in contextFold.features used by contextFold.rnaFolding
FeatureManager
          A parameterization object.
 

Classes in contextFold.features used by contextFold.scoring
AbstractFeatureVector
          A weight vector object.
FeatureManager
          A parameterization object.