A B C D E F G H I J L M N O P R S T U V W X

I

id - Variable in class contextFold.features.Context
 
IL_BASE - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
IL_CLOSE - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
IL_LONG - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
IL_MAX_IX - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
IL_MEDIUM - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
IL_MEDIUM_LENGTH - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
IL_MEDIUM_MAX_TOTAL_LENGTH - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
IL_OPEN - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
IL_SHORT_MAX_IX - Variable in class contextFold.rnaFolding.StructureRecognizerImpl
 
IlLengthCalculator - Class in contextFold.features
 
IlLengthCalculator() - Constructor for class contextFold.features.IlLengthCalculator
 
inclusionMap(Context) - Method in class contextFold.features.Context
 
initializeTables(int) - Method in class contextFold.rnaFolding.Folder
 
initWeight(Collection<FeatureTemplate>, FeatureExtractor, FeatureExtractor, float, String...) - Method in class contextFold.features.FeatureManager
 
initWeights - Variable in class contextFold.features.FeatureTemplate
 
IntervalLengthCalculator - Class in contextFold.features
 
IntervalLengthCalculator() - Constructor for class contextFold.features.IntervalLengthCalculator
 
intValue(String) - Method in class contextFold.common.CmdArgumentsHandler
 
intWeights - Variable in class contextFold.features.DenseFeatureVector
 
isBasepairType(int) - Method in interface contextFold.rnaFolding.StructureRecognizer
 
isBasepairType(int) - Method in class contextFold.rnaFolding.StructureRecognizerImpl
 
isBaseType(int) - Method in interface contextFold.rnaFolding.StructureRecognizer
 
isBaseType(int) - Method in class contextFold.rnaFolding.StructureRecognizerImpl
 
isCompressed - Variable in class contextFold.features.DenseFeatureVector
 
isLengthType(int) - Method in interface contextFold.rnaFolding.StructureRecognizer
 
isLengthType(int) - Method in class contextFold.rnaFolding.StructureRecognizerImpl
 
isPseudoFold(String) - Static method in class contextFold.rna.RNA
 
isStandardRNAChar(char) - Static method in class contextFold.rna.RNA
 
isStandardRNAString(String) - Static method in class contextFold.rna.RNA
 
ITEM_GROUP - Static variable in class contextFold.rna.OneLineReader
 

A B C D E F G H I J L M N O P R S T U V W X