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Hierarchy For All Packages
Package Hierarchies:
contextFold
,
contextFold.app
,
contextFold.common
,
contextFold.features
,
contextFold.learn
,
contextFold.models
,
contextFold.rna
,
contextFold.rnaFolding
,
contextFold.scoring
Class Hierarchy
java.lang.Object
contextFold.features.
AbstractFeatureVector
(implements contextFold.common.
Dotable
<T>, java.io.Serializable)
contextFold.features.
DenseFeatureVector
contextFold.features.
SparseFeatureVector
contextFold.common.
CmdArgumentsHandler
contextFold.features.
Context
(implements java.io.Serializable)
contextFold.common.
Env
contextFold.features.
FeatureExtractor
(implements java.io.Serializable)
contextFold.features.
BinnedLengthFeatureExtractor
contextFold.features.
ContextFeatureExtractor
(implements java.io.Serializable)
contextFold.features.
DoublePosContext
contextFold.features.
SinglePosContext
contextFold.features.
FeatureManager
(implements java.io.Serializable)
contextFold.features.
FeatureManager.Feature
contextFold.models.
FeatureSetter
contextFold.models.
Baseline
contextFold.models.
StHighCoHigh
contextFold.models.
StHighCoMed
contextFold.models.
StMedCoHigh
contextFold.models.
StMedCoMed
contextFold.models.
FeatureSetterFactory
contextFold.features.
FeatureTemplate
(implements java.io.Serializable)
contextFold.scoring.
FMeasureLossCalculator
(implements contextFold.scoring.
LossCalculator
)
contextFold.rnaFolding.
Folder
(implements contextFold.rnaFolding.
Fold
)
contextFold.scoring.
FoldEvaluatorImpl
(implements contextFold.scoring.
FoldEvaluator
)
contextFold.scoring.
HammingLossCalculator
(implements contextFold.scoring.
LossCalculator
)
contextFold.learn.
Hildreth
contextFold.features.
HpLengthCalculator
(implements contextFold.features.
ElementValueCalculator
)
contextFold.features.
IlLengthCalculator
(implements contextFold.features.
ElementValueCalculator
)
contextFold.features.
IntervalLengthCalculator
(implements contextFold.features.
ElementValueCalculator
)
contextFold.learn.
Learn
contextFold.features.
LogLengthValueFeature
(implements contextFold.features.
ValueFeature
)
contextFold.common.
NumberComparator
(implements java.util.Comparator<T>)
contextFold.common.
Pair
<T1,T2>
contextFold.app.
Predict
contextFold.scoring.
PredictionQuality
(implements java.lang.Comparable<T>)
contextFold.app.
PrintModelFeatures
contextFold.rna.
RandomSplit
contextFold.rna.
RNA
contextFold.rna.
RNA_Filter
contextFold.rna.
AnnotationFilter
contextFold.rna.
RNAListReader
contextFold.rna.
OneLineReader
contextFold.rna.
RNAStrandReader
contextFold.rna.
RNAWriter
contextFold.common.
StringModifier
contextFold.common.
SuffixAdder
contextFold.scoring.
StructreElementsScorerImpl
(implements contextFold.scoring.
StructreElementsScorer
)
contextFold.rnaFolding.
StructureRecognizerImpl
(implements contextFold.rnaFolding.
StructureRecognizer
)
contextFold.rnaFolding.
Traceback
contextFold.app.
Train
contextFold.common.
TrainAnnotations
contextFold.common.
Utils
contextFold.app.
ValidatePrediction
contextFold.features.
ValueCalculator
(implements java.io.Serializable)
contextFold.features.
WordFeatureCalculator
Interface Hierarchy
contextFold.common.
Dotable
<T>
contextFold.rnaFolding.
Fold
contextFold.scoring.
FoldEvaluator
contextFold.scoring.
LossCalculator
java.io.Serializable
contextFold.features.
ElementValueCalculator
contextFold.rnaFolding.
StructureRecognizer
contextFold.features.
ValueFeature
contextFold.scoring.
StructreElementsScorer
Overview
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